Index

_

__call__() (ConvertLabel method) (ImageChannelMean method) (ImageMean method) (LogToFile method) (PlotLines method) (TransformImage method) (ViewImage method) (ViewImageAnnotation method) (WriteImage method) __init__() (AugmentImage method) (BuildBatch method) (Checkpoint method) (Config method) (ConvertLabel method) (ImageChannelMean method) (ImageMean method) (KerasNetwork method) (LasagneNetwork method) (LogCols method) (LogToFile method) (Network method) (PlotLines method) (PytorchNetwork method) (ReadPandas method) (TransformImage method) (ViewImage method) (ViewImageAnnotation method) (WriteImage method)

__rrshift__() (AugmentImage method) (BuildBatch method)

A

add_channel() (in module nutsml.imageutil) annotation2coords() (in module nutsml.imageutil) annotation2mask() (in module nutsml.imageutil)

annotation2pltpatch() (in module nutsml.imageutil) arr_to_pil() (in module nutsml.imageutil) AugmentImage (class in nutsml.transformer)

B

batcher module Boost() (in module nutsml.booster) booster module build_image_batch() (in module nutsml.batcher)

build_number_batch() (in module nutsml.batcher) build_one_hot_batch() (in module nutsml.batcher) build_tensor_batch() (in module nutsml.batcher) build_vector_batch() (in module nutsml.batcher) BuildBatch (class in nutsml.batcher) by() (AugmentImage method) (TransformImage method)

C

centers_inside() (in module nutsml.imageutil) change_brightness() (in module nutsml.imageutil) change_color() (in module nutsml.imageutil) change_contrast() (in module nutsml.imageutil) change_sharpness() (in module nutsml.imageutil) CheckNaN() (in module nutsml.common) checkpoint module Checkpoint (class in nutsml.checkpoint) clear_folder() (in module nutsml.fileutil) close() (LogToFile method) col_map() (in module nutsml.datautil)

CollectStratified() (in module nutsml.stratify) common module config module Config (class in nutsml.config) ConvertLabel (class in nutsml.common) create_filename() (in module nutsml.fileutil) create_folders() (in module nutsml.fileutil) create_temp_filepath() (in module nutsml.fileutil) crop() (in module nutsml.imageutil) crop_center() (in module nutsml.imageutil) crop_square() (in module nutsml.imageutil)

D

datapaths() (Checkpoint method) datautil module delete() (LogToFile method)

delete_file() (in module nutsml.fileutil) delete_folders() (in module nutsml.fileutil) delete_temp_data() (in module nutsml.fileutil) dirs() (Checkpoint method) distort_elastic() (in module nutsml.imageutil)

E

enhance() (in module nutsml.imageutil) EvalNut() (in module nutsml.network) evaluate() (KerasNetwork method) (LasagneNetwork method) (Network method) (PytorchNetwork method)

extract_edges() (in module nutsml.imageutil) extract_patch() (in module nutsml.imageutil)

F

fileutil module

fliplr() (in module nutsml.imageutil) flipud() (in module nutsml.imageutil) floatimg2uint8() (in module nutsml.imageutil)

G

gray2rgb() (in module nutsml.imageutil)

group_by() (in module nutsml.datautil) group_samples() (in module nutsml.datautil)

I

identical() (in module nutsml.imageutil) ImageAnnotationToMask() (in module nutsml.transformer) ImageChannelMean (class in nutsml.transformer) ImageMean (class in nutsml.transformer) ImagePatchesByAnnotation() (in module nutsml.transformer)

ImagePatchesByMask() (in module nutsml.transformer) imageutil module input() (BuildBatch method) isjson() (Config static method) isnull() (ReadPandas static method)

K

KerasNetwork (class in nutsml.network)

L

LasagneNetwork (class in nutsml.network) latest() (Checkpoint method) load() (Checkpoint method) (Config method) load_config() (in module nutsml.config) load_image() (in module nutsml.imageutil) load_weights() (KerasNetwork method) (LasagneNetwork method) (Network method) (PytorchNetwork method)

LogCols (class in nutsml.logger) logger module LogToFile (class in nutsml.logger)

M

map_transform() (in module nutsml.transformer) mask_choice() (in module nutsml.imageutil) mask_where() (in module nutsml.imageutil) Mixup() (in module nutsml.batcher) module batcher booster checkpoint common config datautil fileutil imageutil logger network nutsml nutsml.batcher nutsml.booster nutsml.checkpoint nutsml.common nutsml.config nutsml.datautil nutsml.examples nutsml.fileutil nutsml.imageutil nutsml.logger nutsml.network nutsml.plotter nutsml.reader nutsml.stratify nutsml.transformer nutsml.viewer nutsml.writer plotter reader stratify transformer viewer writer

N

network module Network (class in nutsml.network) normalize_histo() (in module nutsml.imageutil) nutsml module nutsml.batcher module nutsml.booster module nutsml.checkpoint module nutsml.common module nutsml.config module nutsml.datautil module nutsml.examples module

nutsml.fileutil module nutsml.imageutil module nutsml.logger module nutsml.network module nutsml.plotter module nutsml.reader module nutsml.stratify module nutsml.transformer module nutsml.viewer module nutsml.writer module

O

occlude() (in module nutsml.imageutil)

output() (BuildBatch method)

P

PartitionByCol() (in module nutsml.common) patch_iter() (in module nutsml.imageutil) pil_to_arr() (in module nutsml.imageutil) PlotLines (class in nutsml.plotter) plotter module polyline2coords() (in module nutsml.imageutil) predict() (KerasNetwork method) (LasagneNetwork method) (Network method) (PytorchNetwork method)

PredictNut() (in module nutsml.network) print_layers() (KerasNetwork method) (LasagneNetwork method) (Network method) (PytorchNetwork method) PytorchNetwork (class in nutsml.network)

R

random_downsample() (in module nutsml.datautil) RandomImagePatches() (in module nutsml.transformer) reader module reader_filepath() (in module nutsml.fileutil) ReadImage() (in module nutsml.reader) ReadLabelDirs() (in module nutsml.reader) ReadNumpy() (in module nutsml.reader)

ReadPandas (class in nutsml.reader) register() (TransformImage class method) RegularImagePatches() (in module nutsml.transformer) rerange() (in module nutsml.imageutil) reset() (PlotLines method) resize() (in module nutsml.imageutil) rgb2gray() (in module nutsml.imageutil) rotate() (in module nutsml.imageutil)

S

sample_labeled_patch_centers() (in module nutsml.imageutil) sample_mask() (in module nutsml.imageutil) sample_patch_centers() (in module nutsml.imageutil) sample_pn_patches() (in module nutsml.imageutil) save() (Checkpoint method) (Config method) save_best() (Checkpoint method) (Network method) save_image() (in module nutsml.imageutil) save_weights() (KerasNetwork method) (LasagneNetwork method) (Network method) (PytorchNetwork method)

set_default_order() (in module nutsml.imageutil) SHAPEPROP (ViewImageAnnotation attribute) shear() (in module nutsml.imageutil) shuffle_sublists() (in module nutsml.datautil) SplitLeaveOneOut() (in module nutsml.common) SplitRandom() (in module nutsml.common) stratify module Stratify() (in module nutsml.stratify)

T

TEXTPROP (ViewImageAnnotation attribute) train() (ImageChannelMean method) (ImageMean method) (KerasNetwork method) (LasagneNetwork method) (Network method) (PytorchNetwork method)

TrainValNut() (in module nutsml.network) transformations (TransformImage attribute) transformer module TransformImage (class in nutsml.transformer) translate() (in module nutsml.imageutil)

U

upsample() (in module nutsml.datautil)

V

validate() (KerasNetwork method) (LasagneNetwork method) (Network method) (PytorchNetwork method)

viewer module ViewImage (class in nutsml.viewer) ViewImageAnnotation (class in nutsml.viewer)

W

WriteImage (class in nutsml.writer)

writer module